Open Genomics Engine (OpenGE)

The Open Genomics Engine (OpenGE) is an open source project for analyzing and interpreting high-throughput sequencing data. The framework is free, easy to install and use; and enables comparative analysis of cancer genomes. OpenGE is extensible and supports the management of analysis pipelines composed of existing tools. Furthermore, OpenGE includes newly developed and modified versions of existing tools that have been optimized for parallel processing on CPUs and GPUs to maximize performance on commodity hardware.